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Sequential search leads to faster, more efficient fragment-based de novo protein structure prediction 期刊论文
BIOINFORMATICS, 2018, 卷号: 34, 期号: 7, 页码: 1132-1140
Authors:  de Oliveira, SHP;  Law, EC;  Shi, JY;  Deane, CM
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Secondary Structure Prediction  Coevolution Methods  Database  Stepwise  Contact  Rosetta  Server  Algorithm  Quality  Model  
Comparing co-evolution methods and their application to template-free protein structure prediction 期刊论文
BIOINFORMATICS, 2017, 卷号: 33, 期号: 3, 页码: 373-381
Authors:  de Oliveira, SHP;  Shi, JY;  Deane, CM
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Examining the Conservation of Kinks in Alpha Helices 期刊论文
PLOS ONE, 2016, 卷号: 11, 期号: 6, 页码: —
Authors:  Law, EC;  Wilman, HR;  Kelm, S;  Shi, JY;  Deane, CM;  Deane, CM (reprint author), Univ Oxford, Dept Stat, Oxford OX1 3TG, England.
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Protein-coupled Receptors  Transmembrane Helices  Structure Alignment  Membrane-proteins  Data-bank  Proline  Distortions  Activation  Algorithm  Features  
Building a Better Fragment Library for De Novo Protein Structure Prediction 期刊论文
PLOS ONE, 2015, 卷号: 10, 期号: 4, 页码: —
Authors:  de Oliveira, SHP;  Shi, JY;  Deane, CM
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Secondary Structure Prediction  Families  Database  
Crowdsourcing Yields a New Standard for Kinks in Protein Helices 期刊论文
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2014, 卷号: 54, 期号: 9, 页码: 2585—2593
Authors:  Wilman, HR;  Ebejer, JP;  Shi, JY;  Deane, CM;  Knapp, B;  knapp@stats.ox.ac.uk
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Transmembrane Helices  Secondary Structure  Membrane-proteins  Alpha-helices  Proline  Geometry  Residue  Hinges  Model  Game  
Improving B-cell epitope prediction and its application to global antibody-antigen docking 期刊论文
BIOINFORMATICS, 2014, 卷号: 30, 期号: 16, 页码: 2288—2294
Authors:  Krawczyk, K;  Liu, XF;  Baker, T;  Shi, J;  Deane, CM;  deane@stats.ox.ac.uk
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Protein-docking  Algorithm  
Fragment-based modeling of membrane protein loops: successes, failures, and prospects for the future 期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2014, 卷号: 82, 期号: 2, 页码: 175—186
Authors:  Kelm, S;  Vangone, A;  Choi, YJ;  Ebejer, JP;  Shi, JY;  Deane, CM;  kelm@stats.ox.ac.uk
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Ab-initio Construction  Structure Prediction  Polypeptide Fragments  Structure Alignment  Search Algorithm  Data-bank  Database  Accurate  Classification  Representation